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    Strep pull down assay

    Xuefeng Ren, Minghao Chen

    Published: 2023-10-17 DOI: 10.17504/protocols.io.3byl4jmpolo5/v1
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    Abstract

    Strep pull down assay for FIP200(NTD)-TSF WT or mutants were co-transfected with GST-ATG13(363-517) and/or ULK1(MIT)-MBP

    Steps

    Expression

    1.

    Transfect 10 ml HEK GNTi cells at concentration of 2 × 10^6 cells/ml

    2.

    Dilute PEI with Warm Hybridoma-SFM(1X)

    3.

    In a separate tube, dilute DNA with Hybridoma-SFM(1X)

    4.

    Add PEI to DNA dilution. Incubate mixture for 0h 30m 0s at 37°C

    5.

    Add mixture to cells. Let cells grow for 48h 0m 0s

    6.

    Harvest Cells 500rpm,0h 0m 0s, 4°C, 0h 10m 0s

    7.

    Wash pellet with cold PBS. Store pellet at-80°C until purification.

    Pull down

    8.

    Homogenize the pellets in 0.5 ml of lysis buffer/protease inhibitors/1% TritonX-100, and clarified after 40000x g,0h 0m 0s , 0h 15m 0s.

    9.

    Incubate the lysate with 30 μl Strep-Tactin Sepharose resin (IBA-Lifesciences) at 4°C for 3h 0m 0s

    10.

    Wash the beads four times, and eluted in 50 μl lysis buffer/4 mM desthiobiotin.

    11.

    Mix 18 μl eluent with lithium dodecylsulfate (LDS)/BME buffer, heated at 60°C for0h 5m 0s and subjected to SDS/PAGE gel. The gel was then stained with Coomassie brilliant blue G250.

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