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      Gcase co-immunoprecipitation

      Hariam Raji, michela.deleidi, Maria Jose Perez J., Federico Bertoli

      Published: 2023-03-31 DOI: 10.17504/protocols.io.14egn2ompg5d/v1
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      Abstract

      We developed this protocol to identify protein-protein interactions between the enzyme glucocerebrosidase (GCase) and other proteins in human iPSC-derived Neural Precursor Cells.

      Attachments

      676- 1426.docx

      Steps

      Gcase co-immunoprecipitation

      1.

      Wash cells 1X with phosphate-buffered saline (PBS, Sigma‒Aldrich) and detach using Accutase.

      2.

      Pellet the cell suspension at 280rcf,23°C.

      3.

      Lyse the pellets in IP/lysis buffer (Thermo Fisher, #87787) supplemented with a protease/phosphatase inhibitor cocktail (Pierce, #A32959).

      4.

      Carry out coimmunoprecipitation using the Thermo Fisher Pierce Crosslink Magnetic IP/Co-IP Kit (#88805) according to the manufacturer´s instructions:

      5.

      Prewash 25µL of Pierce protein A/G magnetic beads (Thermo Fisher, #88802-3) twice with 1X Modified Coupling Buffer and incubate with 10µg of GBA MaxPab polyclonal rabbit antibody (Abnova) or normal rabbit IgG (Covalab, #pab01004-P) on a rotating wheel at4°C.

      6.

      The following day, crosslink the antibody to the beads with a 0.25millimolar (mM) DSS solution for 1h 0m 0s on a rotating wheel at Room temperature.

      7.

      Incubate crosslinked magnetic beads 1h 0m 0s with a total of 7mg of protein for each lysate.

      8.

      Elute Coimmunoprecipitated proteins from the beads with 60µL of the kit-provided Elution buffer 2.0 (Pierce, #88805) and neutralize with 6µL of Neutralization Buffer provided with the kit.

      9.

      Prepare samples for Western blotting by adding 5x Lane buffer +10% DTT 1Molarity (M) to a final concentration of 1X.

      Note
      Each western blot input sample loaded corresponds to a total of 50µg of protein. Each western blot CoIP sample loaded corresponded to the total of each elution product (66µL).

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